How Integrator works
- Both Oscar sites periodically push data into Integrator, which stores it into its database.
- Patients have their demographics registered in both Oscar sites and "linked" through Integrator.
- When a patient's chart is opened in one Oscar site, Oscar will contact the integrator and pull his/her chart data from the other site(s).
- Chart data from remote site is shown with special indication.
Prerequisites
Java Version 6
Sun Java 6 is no longer available in the Ubuntu repositories. However, it can still be installed from Oracle's web site. Alternatively (and likely preferably), you can create packages of Java 6 using this script.
cd ~/ wget https://raw.github.com/flexiondotorg/oab-java6/master/oab-java.sh -O oab-java.sh chmod +x oab-java.sh sudo ./oab-java.sh sudo apt-get install sun-java6-jre
Tomcat version 6
sudo apt-get install tomcat6
Tomcat setting
The following line should be added to tomcat start script before executing the web service:
export JAVA_OPTS="-Xmx1024M -Dcaisi_integrator_config=/usr/share/tomcat6/integrator_override.xml"
1) -Xmx1024M is a suggested value providing Tomcat with 1024 MB of memory. More memory can be assigned if available.
2) /usr/share/tomcat6/ is a suggested path – you should use the path to where you would normally store your oscar.properties file if it was on a similar setup.
Oscar version
Integrator works with Oscar release 12.1. All Oscar systems connected to the same integrator should be on the same version of Oscar.
Installation Via Script
We have created a script which will:
- create integrator_override.xml
- prepare the caisi_integrator database
- download caisi_integrator.war file
It can be downloaded here: integrator_install.sh
Before running, edit the script and set the following variables:
Variable in script | Value |
---|---|
USER= | the mysql username you would like to use to access the database |
PASSWORD= | the password you would like to use to access the database |
DB_HOST= | 127.0.0.1 |
DB_PORT= | 3306 |
DATABASE_NAME= | caisi_integrator |
INTEGRATOR_HOST= | the external IP/hostname used to access the server |
INTEGRATOR_PORT= | the external port used to access the server |
After running, move override file and the war file to their directories:
cp integrator_override.xml /usr/share/tomcat6/ cp caisi_integrator.war /var/lib/tomcat6/webapps/
Skip to oscar.properties and proceed from there.
Manual Setup for Oscar/Integrator
Get Integrator
Option 1: Get war file
You can always download the latest WAR file for the integrator from this url: https://demo.oscarmcmaster.org:11042/job/integratorMaster/lastBuild/org.oscarehr$caisi_integrator/artifact/org.oscarehr/caisi_integrator/0.0-SNAPSHOT/caisi_integrator-0.0-SNAPSHOT.war
Option 2: Get source and build war file
git clone git://oscarmcmaster.git.sourceforge.net/gitroot/oscarmcmaster/integrator cd integrator mvn clean package
integrator_override.xml
This file makes 2 main settings on Integrator:
1) database info for Integrator
2) url for Oscar sites to access Integrator <https_endpoint_url_base>
In order for this file to function please refer to section - Tomcat setting
If this file does not exist/function Integrator runs with the default values (<<tomcat_base>>/webapps/caisi_integrator/WEB-INF/classes/config.xml)
<?xml version="1.0" encoding="UTF-8" standalone="yes"?> <server> <database> <user>root</user> <password>rootpass</password> <url_prefix>jdbc:mysql://10.10.10.1:3306/</url_prefix> <schema>caisi_integrator</schema> <driver>com.mysql.jdbc.Driver</driver> </database> <integrator_server> <https_endpoint_url_base>http://oscarintegrator:8080/caisi_integrator/ws</https_endpoint_url_base> <require_consent_to_read_data>false</require_consent_to_read_data> <require_phi_filter_to_read_data>false</require_phi_filter_to_read_data> <log_performance>false</log_performance> </integrator_server> </server>
Integrator war file
- Rename the above acquired war file to "caisi_integrator.war"
- If you are running integrator in a dedicated server, put the war file into /var/lib/tomcat6/webapps/ If you are running integrator alongside with Oscar, put the war file together with the Oscar war file.
Integrator database setup
- get sql script from https://demo.oscarmcmaster.org:11042/job/integratorMaster/lastBuild/artifact/target/create_tables.sql
- create database:
(linux commands)
create database caisi_integrator | mysql -uroot -prootpass -h10.10.10.1 -P3306
grant all on caisi_integrator.* to root@localhost identified by "rootpass" | mysql -uroot -prootpass -h10.10.10.1 -P3306 caisi_integrator
Note:
The above commands are only an example. All the databases, users, passwords, hosts, ports can be changed but keep them consistent along all setup. Same thing apply to the following steps. - build database:
(linux command) mysql -uroot -prootpass -h10.10.10.1 -P3306 caisi_integrator < create_tables.sql - prepare initial data:
Login to mysql and use the caisi_integrator database. Run the following commands:
insert into SiteUser (name,password) values ('admin',unhex(sha1('admin')));
create table CachedProviderRole (caisiItemId varchar(16) not null, integratorFacilityId int(11) not null, providerRole varchar(32) not null);
create table HomelessPopulationReportPrograms (configurationTime datetime not null, index(configurationTime), facilityId int not null, programId int not null);
oscar.properties
Ensure these three properties are present in the oscar.properties file for each Oscar system you wish to connect to the integrator:
Variable | Value | Comment |
---|---|---|
program= | on | |
INTEGRATOR_UPDATE_PERIOD= | 1800000 | This value is in milliseconds. OMD requires sync within 30 minutes. |
ENABLE_CONFORMANCE_ONLY_FEATURES= | true |
Web Setup
Integrator Web Setup
- Run Integrator by starting tomcat
Open a web browser and go to: http://integrator_server_name:8080/caisi_integrator
change "integrator_server_name" and port according to your own settings- Select "Integrator Site"
- Login as "admin", password: "admin"
- Select "Administration"
- Select "Manage Facilities"
- Select "Add New Facility", enter a username and password for each Oscar site to use on connecting to the integrator. The facility username and password will be used in the next section.
- Repeat step 7. Each facility represents one Oscar site.
Oscar Web Setup
- Start Oscar (if not already running)
- Login to Oscar using an account with admin rights
- Select "Admin" in the top menu
- Select "Manage Facilities" under "Misc"
- Select "Edit"
Change "Name", "Description" to something of your choice.
The name field will be used to identify this Oscar instance at other facilities so we suggest using something short and identifiable.
For example, a name of "Fakestreet Family Health Team" is likely too long, whereas "FFHT" may not be unique or identifiable, but "Fakestreet" allows users at other sites to know what site information is coming from.- Enter "http://integrator_server_name:8080/caisi_integrator/ws" into "Integrator Url" (This should be the URL from step 2 in the previous section + "/ws")
- Enter "Integrator User" and "Integrator password" with the facility name and password from step 7 in the previous section
- Check "Enable Integrator"
- Save. You will be prompted with "Remove Demographic Identity NOT checked! Is it OK?". Select "OK".
Repeat the above steps for each Oscar site you wish to connect to the integrator. Each site must have a different facility name.
Oscar will now push data to Integrator once every INTEGRATOR_UPDATE_PERIOD. Note that the update period starts its count on Oscar startup, so you may not see any data push immediately after the above setup.
A patients E-Chart Encounter notes do not abide by the syncing period set by 'INTEGRATOR_UPDATE_PERIOD'. Encounter notes update 60 minutes after the previous Encounter notes sync.
Integrator Preferences Within Oscar
The purpose of setting this is to allow all patients to be synced, or by default only Rostered patients will be synced.
- Login Oscar with an account which has admin rights
- Select "Admin" in the top menu
- Select "Integrator Preferences"
- Check "All Patients with Charts Opened Since [never]" and save.
Note:
1) To change the [never] in step 4), login mysql and use the Oscar database, run the following command:
insert into property (name, value) values ("integrator_last_push", "2012-06-14 17:03:30");
* Change the date and time according to your need
2) On 1st push/pull of data to Integrator, Integrator Preference may be reset. Please re-apply the setting if this happens. (Bug to be fixed)
Adding a "Linked" Patient
Assume you have a patient named "Linker, Boy" in Oscar site 1. Follow the steps below to create his "linked" counterpart in Oscar site 2:
- Wait until Oscar site 1 has successfully pushed at least once to Integrator.
- Login Oscar site 2
- Select a time-slot to make an appointment.
- In "Last Name", enter "Linker", select "Search"
A list of "Linker"s will be shown, or "No results were found!" will be shown.
If a patient is instantly selected, that means you have 1 "Linker" in Oscar site 2. Enter fewer letters in the "Last Name" entry (e.g. "Li") so that you can stay in the PATIENT'S RECORD window.Check "Incl. Integrated Results" and select "Search" again.
If the "Incl. Integrated Results" checkbox is not found, check that Integrator push is enabled for Oscar site 2.- You should now see a "Linker, Boy" with demographic ID "Integrator XXX:X" in the list. Select it.
- A new demographic "Linker, Boy" has been created in Oscar Site 2. You can cancel the appointment making if you do not intend to make one.
The new "Linker, Boy" is linked to "Linker, Boy" in Oscar site 1. All data created in one site will be shown in another.
Known Issues
Potential Incorrectly Formatted Data in Oscar's Program Table
For a newly created Oscar database, please check the "program" table:
select defaultServiceRestrictionDays from program;
If any one of the results is NULL, run the following mysql command:
update program set defaultServiceRestrictionDays=0 where defaultServiceRestrictionDays is NULL;
If this is not corrected, the integrator push will fail.
https://github.com/flexiondotorg/oab-java6